Jalview.org

Jalview has built in DNA, RNA and protein sequence and structure visualisation and analysis capabilities, and uses Jmol to view 3D structures, and VARNA to display RNA secondary structure. Jalview also interfaces to the Chimera molecular visualisation system. The Jalview Desktop can also connect with databases and analysis services, and provides a graphical interface to the alignment and analysis services provided by the JavA Bioinformatics Analysis Web Services framework. For full details see www.jalview.org.